Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold212.115

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1482
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27


Found at i:1162 original size:3 final size:3

Alignment explanation


    Indices: 1156--1180  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1146 AGAAGAAAAA

                                             
       1156 GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT G

       1181 CAGCATCAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32


Consensus pattern (3 bp):   
GAT

Done.