Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold2153.6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30


Found at i:500 original size:27 final size:27

Alignment explanation


    Indices: 469--532  Score: 128
    Period size: 27  Copynumber: 2.4  Consensus size: 27

        459 AATCTTAAAT

                                       
        469 CAGATTGATCAAGAACGTGAGGGTGAG
          1 CAGATTGATCAAGAACGTGAGGGTGAG

                                       
        496 CAGATTGATCAAGAACGTGAGGGTGAG
          1 CAGATTGATCAAGAACGTGAGGGTGAG

                      
        523 CAGATTGATC
          1 CAGATTGATC

        533 GAGCTTTGTT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   37  1.00

ACGTcount: A:0.33, C:0.12, G:0.34, T:0.20


Consensus pattern (27 bp):   
CAGATTGATCAAGAACGTGAGGGTGAG
Done.