Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold220.13

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2019
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27


Found at i:1967 original size:19 final size:19

Alignment explanation


    Indices: 1943--1979  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1933 AAATGCATGC

                      *        
       1943 ATGGGCTTCTGAAAAGCTT
          1 ATGGGCTTCTCAAAAGCTT

                              
       1962 ATGGGCTTCTCAAAAGCT
          1 ATGGGCTTCTCAAAAGCT

       1980 AGAAATGGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Consensus pattern (19 bp):   
ATGGGCTTCTCAAAAGCTT
Done.