Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold220.225

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6423
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26


Found at i:4147 original size:21 final size:21

Alignment explanation


    Indices: 4123--4163  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4113 TGCAATAGCA

                 *     * *       
       4123 GCTGCTGCTGCTGTTGCCAAG
          1 GCTGCAGCTGCGGCTGCCAAG

                                
       4144 GCTGCAGCTGCGGCTGCCAA
          1 GCTGCAGCTGCGGCTGCCAA

       4164 TGTTGCCTCA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.12, C:0.32, G:0.34, T:0.22


Consensus pattern (21 bp):   
GCTGCAGCTGCGGCTGCCAAG
Done.