Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold220.458

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 960
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25


Found at i:692 original size:24 final size:24

Alignment explanation


    Indices: 665--711  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        655 CCCGCTGCTT

                                    
        665 CTCCTGAAGCTGAAAAAGAATTGC
          1 CTCCTGAAGCTGAAAAAGAATTGC

                                   
        689 CTCCTGAAGCTGAAAAAGAATTG
          1 CTCCTGAAGCTGAAAAAGAATTG

        712 AAGGTAATAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21


Consensus pattern (24 bp):   
CTCCTGAAGCTGAAAAAGAATTGC
Done.