Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold2207.3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 421

Length: 702
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21


Found at i:106 original size:24 final size:23

Alignment explanation


    Indices: 62--107  Score: 56
    Period size: 24  Copynumber: 2.0  Consensus size: 23

         52 GAAGAAAGAG

                         * **      
         62 AGAAGAAAGCAGATGCTGAAGCT
          1 AGAAGAAAGCAGAGGAGGAAGCT

                                   
         85 AGAAGAAAGGCAGAGGAGGAAGC
          1 AGAAGAAA-GCAGAGGAGGAAGC

        108 CAGGTGCAAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  23    8  0.42
  24   11  0.58

ACGTcount: A:0.46, C:0.11, G:0.37, T:0.07


Consensus pattern (23 bp):   
AGAAGAAAGCAGAGGAGGAAGCT
Done.