Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold223.18

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2577
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29


Found at i:2468 original size:6 final size:6

Alignment explanation


    Indices: 2457--2485  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       2447 AAGTTTTGAG

                                             
       2457 AGGCCA AGGCCA AGGCCA AGGCCA AGGCC
          1 AGGCCA AGGCCA AGGCCA AGGCCA AGGCC

       2486 GAGAAGGAGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.31, C:0.34, G:0.34, T:0.00


Consensus pattern (6 bp):   
AGGCCA

Done.