Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold223.276

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4188
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25


Found at i:2745 original size:87 final size:87

Alignment explanation


    Indices: 2599--2763  Score: 251
    Period size: 87  Copynumber: 1.9  Consensus size: 87

       2589 AGAGGAAAGC

                                         *  *            * *     **          
       2599 CAACCTTCAAAGTATATTGAAGAAGATACTCATAACTTAACTGAGCATAACACTGGGGATGCACC
          1 CAACCTTCAAAGTATATTGAAGAAGATACACAAAACTTAACTGAGAAAAACACAAGGGATGCACC

                                  
       2664 AAATGCCGTTCAAAGCAGAGAT
         66 AAATGCCGTTCAAAGCAGAGAT

                                   *                                         
       2686 CAACCTTCAAAGTATATTGAAGACGATACACAAAACTTAACTGA-AAAAAGCACAAGGGATGCAC
          1 CAACCTTCAAAGTATATTGAAGAAGATACACAAAACTTAACTGAGAAAAA-CACAAGGGATGCAC

                          
       2750 CAAATGCCGTTCAA
         65 CAAATGCCGTTCAA

       2764 TGCATAGACG


Statistics
Matches: 70,  Mismatches: 7, Indels: 2
        0.89            0.09        0.03

Matches are distributed among these distances:
  86    3  0.04
  87   67  0.96

ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20


Consensus pattern (87 bp):   
CAACCTTCAAAGTATATTGAAGAAGATACACAAAACTTAACTGAGAAAAACACAAGGGATGCACC
AAATGCCGTTCAAAGCAGAGAT
Done.