Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold2236.2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 383

Length: 639
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21


Found at i:379 original size:21 final size:21

Alignment explanation


    Indices: 335--389  Score: 56
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        325 ACGACTAGGC

                      *  *   *    
        335 AGATCAAGGATAATCTGGAGCA
          1 AGATCAA-GACAAGCTGAAGCA

                                 
        357 AGATCAAGACAAGCTGAAGCA
          1 AGATCAAGACAAGCTGAAGCA

               **       
        378 AGAAGAAGACAA
          1 AGATCAAGACAA

        390 AGTGAAAGAC


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  21   21  0.75
  22    7  0.25

ACGTcount: A:0.49, C:0.15, G:0.25, T:0.11


Consensus pattern (21 bp):   
AGATCAAGACAAGCTGAAGCA
Done.