Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold230.16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 851

Length: 1419
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32


Found at i:486 original size:17 final size:19

Alignment explanation


    Indices: 450--486  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        440 ACTTCTCACT

                               
        450 GTTCATGGCTGTTGGCAAC
          1 GTTCATGGCTGTTGGCAAC

                *              
        469 GTTCTTGGCT-TT-GCAAC
          1 GTTCATGGCTGTTGGCAAC

             
        486 G
          1 G

        487 GGATCGTACA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  17    6  0.35
  18    2  0.12
  19    9  0.53

ACGTcount: A:0.14, C:0.22, G:0.30, T:0.35


Consensus pattern (19 bp):   
GTTCATGGCTGTTGGCAAC
Done.