Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold2303.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3759
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27


Found at i:717 original size:60 final size:60

Alignment explanation


    Indices: 644--761  Score: 200
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        634 GGTGATGAGC

                            *              *      *                     
        644 TGGATTCCTCTCTGGTTTCCTCTTGGAAACATGCTGCAGATGATGAGGATGATGGTGAAT
          1 TGGATTCCTCTCTGGTGTCCTCTTGGAAACACGCTGCAAATGATGAGGATGATGGTGAAT

                   *                                                  
        704 TGGATTCTTCTCTGGTGTCCTCTTGGAAACACGCTGCAAATGATGAGGATGATGGTGA
          1 TGGATTCCTCTCTGGTGTCCTCTTGGAAACACGCTGCAAATGATGAGGATGATGGTGA

        762 TGGCGTTGAC


Statistics
Matches: 54,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  60   54  1.00

ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32


Consensus pattern (60 bp):   
TGGATTCCTCTCTGGTGTCCTCTTGGAAACACGCTGCAAATGATGAGGATGATGGTGAAT

Found at i:1800 original size:15 final size:15

Alignment explanation


    Indices: 1776--1805  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1766 AAAGCCTATC

                           
       1776 GTCTGGGGATGTTGA
          1 GTCTGGGGATGTTGA

                 *         
       1791 GTCTGTGGATGTTGA
          1 GTCTGGGGATGTTGA

       1806 ACAAGCTGAG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.13, C:0.07, G:0.43, T:0.37


Consensus pattern (15 bp):   
GTCTGGGGATGTTGA
Done.