Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold106.248

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1869
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23


Found at i:789 original size:33 final size:33

Alignment explanation


    Indices: 752--867  Score: 144
    Period size: 33  Copynumber: 3.5  Consensus size: 33

        742 TCAGTTGGTT

                        * *                  
        752 CGAGCCAGATTAGTAAGCCCGAGCCTACATGGA
          1 CGAGCCAGATTAATCAGCCCGAGCCTACATGGA

                           *  *              
        785 CGAGCCAGATTAATCGGCTCGAGCCTACATGGA
          1 CGAGCCAGATTAATCAGCCCGAGCCTACATGGA

                                        **   *
        818 CGAGCCA-AGTTAATCAGCCCGAGCCTATTTGGG
          1 CGAGCCAGA-TTAATCAGCCCGAGCCTACATGGA

               *             
        851 CGACCCAGATTAATCAG
          1 CGAGCCAGATTAATCAG

        868 ATGGGAACCG


Statistics
Matches: 71,  Mismatches: 10, Indels: 4
        0.84            0.12        0.05

Matches are distributed among these distances:
  32    1  0.01
  33   69  0.97
  34    1  0.01

ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18


Consensus pattern (33 bp):   
CGAGCCAGATTAATCAGCCCGAGCCTACATGGA
Done.