Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold249.44

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1809
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31


Found at i:1557 original size:16 final size:17

Alignment explanation


    Indices: 1524--1557  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       1514 TGGCTGAGGT

                         *   
       1524 TGCGGCTGAGAAGCTCA
          1 TGCGGCTGAGAAGATCA

                             
       1541 TGCGGCT-AGAAGATCA
          1 TGCGGCTGAGAAGATCA

             
       1557 T
          1 T

       1558 AGTGGGGTAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    9  0.56
  17    7  0.44

ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21


Consensus pattern (17 bp):   
TGCGGCTGAGAAGATCA
Done.