Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold25.210

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 268

Length: 447
ACGTcount: A:0.34, C:0.23, G:0.28, T:0.16


Found at i:40 original size:15 final size:15

Alignment explanation


    Indices: 16--54  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

          6 ACCAAAAGCA

                           
         16 GAGAAAAAGCCAGCG
          1 GAGAAAAAGCCAGCG

                 *        *
         31 GAGAAGAAGCCAGCA
          1 GAGAAAAAGCCAGCG

               *     
         46 GAGGAAAAG
          1 GAGAAAAAG

         55 AAGACGACGG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.49, C:0.15, G:0.36, T:0.00


Consensus pattern (15 bp):   
GAGAAAAAGCCAGCG
Done.