Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold263.50

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2994
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24


Found at i:2639 original size:15 final size:15

Alignment explanation


    Indices: 2619--2654  Score: 63
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       2609 AGCCTGGAGT

                           
       2619 TGCTGCTGCCCCTGC
          1 TGCTGCTGCCCCTGC

                           
       2634 TGCTGCTGCCCCTGC
          1 TGCTGCTGCCCCTGC

            *     
       2649 CGCTGC
          1 TGCTGC

       2655 CTCTGCCGCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.00, C:0.47, G:0.28, T:0.25


Consensus pattern (15 bp):   
TGCTGCTGCCCCTGC

Found at i:2653 original size:12 final size:12

Alignment explanation


    Indices: 2623--2666  Score: 52
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       2613 TGGAGTTGCT

                          
       2623 GCTGCCCCTGCTGC
          1 GCTGCCCCTGC--C

                         
       2637 TGCTGCCCCTGCC
          1 -GCTGCCCCTGCC

                  *     
       2650 GCTGCCTCTGCC
          1 GCTGCCCCTGCC

                 
       2662 GCTGC
          1 GCTGC

       2667 TCCATCTCCT


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  12   16  0.57
  13    1  0.04
  15   11  0.39

ACGTcount: A:0.00, C:0.50, G:0.27, T:0.23


Consensus pattern (12 bp):   
GCTGCCCCTGCC
Done.