Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold263.110

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1950
ACGTcount: A:0.37, C:0.11, G:0.28, T:0.23


Found at i:752 original size:21 final size:21

Alignment explanation


    Indices: 720--764  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        710 TGAGGAGAGG

                          *      
        720 GAATGAAAAGATTGTGAGGGA
          1 GAATGAAAAGATTGAGAGGGA

                              *   
        741 GAAT-AAAGAGATTGAGATGGA
          1 GAATGAAA-AGATTGAGAGGGA

               
        762 GAA
          1 GAA

        765 AAATGAGCAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  20    3  0.14
  21   18  0.86

ACGTcount: A:0.47, C:0.00, G:0.36, T:0.18


Consensus pattern (21 bp):   
GAATGAAAAGATTGAGAGGGA
Done.