Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold265.19

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31


Found at i:354 original size:6 final size:6

Alignment explanation


    Indices: 339--371  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        329 GCCTTTCTTT

                 *                                
        339 TCCAAG TCCAAA TCCAAA TCCAAA TCCAAA TCC
          1 TCCAAA TCCAAA TCCAAA TCCAAA TCCAAA TCC

        372 GACCCTCTTG


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.42, C:0.36, G:0.03, T:0.18


Consensus pattern (6 bp):   
TCCAAA

Done.