Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold277.14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1944
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:1839 original size:15 final size:16

Alignment explanation


    Indices: 1812--1841  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1802 ATGAGGAGTT

                            
       1812 AAGATTGGAGCTGCAA
          1 AAGATTGGAGCTGCAA

                           
       1828 AAGATT-GAGCTGCA
          1 AAGATTGGAGCTGCA

       1842 GTACCAGGAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20


Consensus pattern (16 bp):   
AAGATTGGAGCTGCAA
Done.