Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold106.635

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28


Found at i:217 original size:12 final size:12

Alignment explanation


    Indices: 202--239  Score: 58
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        192 AGATGACACT

                        
        202 GGTGGTGGCGGC
          1 GGTGGTGGCGGC

                    *  *
        214 GGTGGTGGAGGT
          1 GGTGGTGGCGGC

                        
        226 GGTGGTGGCGGC
          1 GGTGGTGGCGGC

              
        238 GG
          1 GG

        240 CGGCGGTGGT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.03, C:0.11, G:0.68, T:0.18


Consensus pattern (12 bp):   
GGTGGTGGCGGC

Found at i:232 original size:24 final size:24

Alignment explanation


    Indices: 201--253  Score: 79
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        191 GAGATGACAC

                           *  *     
        201 TGGTGGTGGCGGCGGTGGTGGAGG
          1 TGGTGGTGGCGGCGGCGGCGGAGG

                                 *  
        225 TGGTGGTGGCGGCGGCGGCGGTGG
          1 TGGTGGTGGCGGCGGCGGCGGAGG

                 
        249 TGGTG
          1 TGGTG

        254 ACACTGGTGG


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.02, C:0.11, G:0.66, T:0.21


Consensus pattern (24 bp):   
TGGTGGTGGCGGCGGCGGCGGAGG

Found at i:252 original size:21 final size:21

Alignment explanation


    Indices: 202--253  Score: 68
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        192 AGATGACACT

                    *     *  *   
        202 GGTGGTGGCGGCGGTGGTGGA
          1 GGTGGTGGTGGCGGCGGCGGA

                                *
        223 GGTGGTGGTGGCGGCGGCGGC
          1 GGTGGTGGTGGCGGCGGCGGA

                      
        244 GGTGGTGGTG
          1 GGTGGTGGTG

        254 ACACTGGTGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.02, C:0.12, G:0.67, T:0.19


Consensus pattern (21 bp):   
GGTGGTGGTGGCGGCGGCGGA
Done.