Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold283.151

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26


Found at i:186 original size:15 final size:15

Alignment explanation


    Indices: 166--196  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        156 ACTTCTCGCT

                           
        166 CAACAACAGCAGCCG
          1 CAACAACAGCAGCCG

                           
        181 CAACAACAGCAGCCG
          1 CAACAACAGCAGCCG

             
        196 C
          1 C

        197 TCTCTTCCAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.42, G:0.19, T:0.00


Consensus pattern (15 bp):   
CAACAACAGCAGCCG
Done.