Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold283.264

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1542
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26


Found at i:1488 original size:204 final size:204

Alignment explanation


    Indices: 1138--1535  Score: 561
    Period size: 204  Copynumber: 2.0  Consensus size: 204

       1128 AACTACACCT

                                        *     **    *                    *   
       1138 AGCAAGGCTCTTCCTGCACCTACAGAGGTAAAACCCGAGCCCAAAGTCGAAGCAGCAGCAGCACC
          1 AGCAAGGCTCTTCCTGCACCTACAGAGGCAAAACAAGAGCACAAAGTCGAAGCAGCAGCAGAACC

                 *              *        *                                   
       1203 CCCTCTTCAAATTAATTCAGTTCCCACAATAGAACCCAAGACAGATGGAATCCCTGGAATTCCTA
         66 CCCTCCTCAAATTAATTCAGATCCCACAACAGAACCCAAGACAGATGGAATCCCTGGAATTCCTA

                             * *                       *              *      
       1268 GACCACTTTCACCATATGCTTCTTATCCGGATTTGAAGCCTCCGACATCTCCTACTCCTTCACAG
        131 GACCACTTTCACCATATCCATCTTATCCGGATTTGAAGCCTCCAACATCTCCTACTCCATCACAG

                     
       1333 CCTACCACA
        196 CCTACCACA

                          *    *          *                 *                
       1342 AGCAAGGC-CATTCTTGCATCTACAGAGGCGAAACAAGAGCACAAAGTTGAAGCAGCAGCAGAAC
          1 AGCAAGGCTC-TTCCTGCACCTACAGAGGCAAAACAAGAGCACAAAGTCGAAGCAGCAGCAGAAC

                                                *        *                *  
       1406 CCCCTCCTCAAATTAATTCAGATCTCCA-AACAGAATCCAATG-CGGATGGAATCTCC-GGATTT
         65 CCCCTCCTCAAATTAATTCAGATC-CCACAACAGAACCCAA-GACAGATGGAATC-CCTGGAATT

                                                                             
       1468 CCTAGACCACTTTCACCATATCCATCTTATCCGGATTTGAAGCCTCCAACATCTCCTACTCCATC
        127 CCTAGACCACTTTCACCATATCCATCTTATCCGGATTTGAAGCCTCCAACATCTCCTACTCCATC

               
       1533 ACA
        192 ACA

       1536 ACCCTAA


Statistics
Matches: 171,  Mismatches: 19, Indels: 8
        0.86            0.10        0.04

Matches are distributed among these distances:
 203    1  0.01
 204  164  0.96
 205    6  0.04

ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22


Consensus pattern (204 bp):   
AGCAAGGCTCTTCCTGCACCTACAGAGGCAAAACAAGAGCACAAAGTCGAAGCAGCAGCAGAACC
CCCTCCTCAAATTAATTCAGATCCCACAACAGAACCCAAGACAGATGGAATCCCTGGAATTCCTA
GACCACTTTCACCATATCCATCTTATCCGGATTTGAAGCCTCCAACATCTCCTACTCCATCACAG
CCTACCACA
Done.