Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold283.332

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:147 original size:3 final size:3

Alignment explanation


    Indices: 139--200  Score: 61
    Period size: 3  Copynumber: 20.7  Consensus size: 3

        129 CCATCATTTC

                                      *   *           *   *   *   *   *    
        139 CAA CAA CAA CAA CAA CAA CAT CAG CAA CAA CAG CAG CAG CAG CAG CAA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA

                              
        187 CAA CAA CAA CAA CA
          1 CAA CAA CAA CAA CA

        201 GCAGCAACAG


Statistics
Matches: 54,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   54  1.00

ACGTcount: A:0.55, C:0.34, G:0.10, T:0.02


Consensus pattern (3 bp):   
CAA

Done.