Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold285.26

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1791
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25


Found at i:242 original size:36 final size:36

Alignment explanation


    Indices: 192--372  Score: 296
    Period size: 36  Copynumber: 5.1  Consensus size: 36

        182 ATGATCATGA

                                    *           
        192 CCAAGTGAATCAAGTAGAAACATCAGAAGCTTCATT
          1 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

              *                           *     
        228 CCCAGTGAATCAAGTAGAAACATCTGAAGCCTCATT
          1 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

                                                
        264 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT
          1 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

                                                
        300 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT
          1 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

               **                               
        336 ---TTTGAATCAAGTAGAAACATCTGAAGCTTCATT
          1 CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

                
        369 CCAA
          1 CCAA

        373 ACCAAATCGG


Statistics
Matches: 134,  Mismatches: 8, Indels: 6
        0.91            0.05        0.04

Matches are distributed among these distances:
  33   31  0.23
  36  103  0.77

ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25


Consensus pattern (36 bp):   
CCAAGTGAATCAAGTAGAAACATCTGAAGCTTCATT

Done.