Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold298.25

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.19, C:0.18, G:0.36, T:0.27


Found at i:450 original size:18 final size:18

Alignment explanation


    Indices: 427--465  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        417 CAATGGTGAA

                    *         
        427 GGCTATGGCGAGGGACAT
          1 GGCTATGGAGAGGGACAT

                          *   
        445 GGCTATGGAGAGGGTCAT
          1 GGCTATGGAGAGGGACAT

               
        463 GGC
          1 GGC

        466 AGCGGTGGCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.21, C:0.15, G:0.46, T:0.18


Consensus pattern (18 bp):   
GGCTATGGAGAGGGACAT
Done.