Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold3.49

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 273

Length: 456
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23


Found at i:40 original size:6 final size:6

Alignment explanation


    Indices: 8--39  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

          1 ATGGCCT

                                          *      
          8 CAACAG CAACAG CAACAG CAACAG CAGCAG CA
          1 CAACAG CAACAG CAACAG CAACAG CAACAG CA

         40 GTTTCGTCTG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.47, C:0.34, G:0.19, T:0.00


Consensus pattern (6 bp):   
CAACAG
Done.