Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold3.622

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1680
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26


Found at i:1387 original size:33 final size:33

Alignment explanation


    Indices: 1345--1413  Score: 129
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       1335 GCAGCCTAAG

                                             
       1345 AAAGGCTGCAACATGGATCGGGACGGGAGGTCA
          1 AAAGGCTGCAACATGGATCGGGACGGGAGGTCA

                                         *   
       1378 AAAGGCTGCAACATGGATCGGGACGGGAGTTCA
          1 AAAGGCTGCAACATGGATCGGGACGGGAGGTCA

               
       1411 AAA
          1 AAA

       1414 TCAGGCTTGA


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.33, C:0.17, G:0.36, T:0.13


Consensus pattern (33 bp):   
AAAGGCTGCAACATGGATCGGGACGGGAGGTCA
Done.