Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold109.42

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22


Found at i:800 original size:6 final size:6

Alignment explanation


    Indices: 789--822  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        779 CATCATGGCC

                                                   
        789 TCAGGG TCAGGG TCAGGG TCAGGG TCAGGG TCAG
          1 TCAGGG TCAGGG TCAGGG TCAGGG TCAGGG TCAG

        823 CCACAGCAGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.18, C:0.18, G:0.47, T:0.18


Consensus pattern (6 bp):   
TCAGGG

Done.