Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold320.161

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2766
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26


Found at i:534 original size:21 final size:21

Alignment explanation


    Indices: 510--551  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        500 ATAAGTATAG

                  *               
        510 GGAGAATCCTGA-GAGTGAGGA
          1 GGAGAAGCCTGATGA-TGAGGA

                                 
        531 GGAGAAGCCTGATGATGAGGA
          1 GGAGAAGCCTGATGATGAGGA

        552 TGAAGATGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.33, C:0.10, G:0.43, T:0.14


Consensus pattern (21 bp):   
GGAGAAGCCTGATGATGAGGA
Done.