Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold320.174

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1467
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27


Found at i:942 original size:21 final size:21

Alignment explanation


    Indices: 918--974  Score: 96
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        908 TTACCAGTGA

                            *    
        918 TTCTCCCAGGTTTAACGTTGG
          1 TTCTCCCAGGTTTAACATTGG

                       *         
        939 TTCTCCCAGGTATAACATTGG
          1 TTCTCCCAGGTTTAACATTGG

                           
        960 TTCTCCCAGGTTTAA
          1 TTCTCCCAGGTTTAA

        975 TGCTAGCTTC


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   33  1.00

ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37


Consensus pattern (21 bp):   
TTCTCCCAGGTTTAACATTGG
Done.