Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold324.58

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 412

Length: 687
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24


Found at i:286 original size:3 final size:3

Alignment explanation


    Indices: 278--335  Score: 109
    Period size: 3  Copynumber: 19.7  Consensus size: 3

        268 AGTCGTTTCA

                                                                           
        278 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG

                          
        325 AAG AAG AAG AA
          1 AAG AAG AAG AA

        336 TGGTGAGAAT


Statistics
Matches: 54,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   2    2  0.04
   3   52  0.96

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
AAG

Done.