Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold335.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1833
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25


Found at i:1717 original size:24 final size:24

Alignment explanation


    Indices: 1680--1744  Score: 87
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       1670 GGCCTGCGTA

                                  *  
       1680 TCAGCCTCTA-CAGCAGCCACAGTC
          1 TCAGCCTC-AGCAGCAGCCACAATC

                *                   
       1704 TCAGTCTCAGCAGCAGCCACAATC
          1 TCAGCCTCAGCAGCAGCCACAATC

                        *    
       1728 TCAGCCTCAGCATCAGC
          1 TCAGCCTCAGCAGCAGC

       1745 AGCCAACCAC


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  23    1  0.03
  24   35  0.97

ACGTcount: A:0.26, C:0.40, G:0.17, T:0.17


Consensus pattern (24 bp):   
TCAGCCTCAGCAGCAGCCACAATC
Done.