Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold352.7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2379
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26


Found at i:489 original size:27 final size:26

Alignment explanation


    Indices: 359--491  Score: 83
    Period size: 27  Copynumber: 4.9  Consensus size: 26

        349 GAGAATTCAG

                                  *    
        359 ATGACAAAAAGTCTGATCCTGAAGAGA
          1 ATGACAAAAA-TCTGATCCTGATGAGA

            ***    *   *                
        386 GCAACGAGAAACCTGACTCC-GATGAGA
          1 ATGAC-AAAAATCTGA-TCCTGATGAGA

                             *    *    
        413 ATGACAAGAAATCTGATTCTGAGGAGA
          1 ATGACAA-AAATCTGATCCTGATGAGA

            *                *           
        440 GTGATGC-AAAATCT-AACTCTGATGAGA
          1 ATGA--CAAAAATCTGATC-CTGATGAGA

                                     
        467 ATGACAACAAATCTGATCCTGATGA
          1 ATGACAA-AAATCTGATCCTGATGA

        492 TGGTGAAAAG


Statistics
Matches: 77,  Mismatches: 19, Indels: 20
        0.66            0.16        0.17

Matches are distributed among these distances:
  25    1  0.01
  26    5  0.06
  27   60  0.78
  28   10  0.13
  29    1  0.01

ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20


Consensus pattern (26 bp):   
ATGACAAAAATCTGATCCTGATGAGA
Done.