Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold36.499

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31


Found at i:110 original size:6 final size:6

Alignment explanation


    Indices: 99--137  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

         89 GGAGTTCACG

                              *                          
         99 CTCCGC CTCCGC CTCCAC CTCCGC CTCCGC CTCCGC CTC
          1 CTCCGC CTCCGC CTCCGC CTCCGC CTCCGC CTCCGC CTC

        138 TTCCTCTACA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   31  1.00

ACGTcount: A:0.03, C:0.67, G:0.13, T:0.18


Consensus pattern (6 bp):   
CTCCGC

Done.