Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold364.332

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 439

Length: 732
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27


Found at i:688 original size:24 final size:24

Alignment explanation


    Indices: 661--708  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        651 TGGTCTTGCT

                                    
        661 TATGACAGGCACAAGAGTCCTGAG
          1 TATGACAGGCACAAGAGTCCTGAG

                **     * *          
        685 TATGGGAGGCATAGGAGTCCTGAG
          1 TATGACAGGCACAAGAGTCCTGAG

        709 AATGGGAGAT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.29, C:0.17, G:0.35, T:0.19


Consensus pattern (24 bp):   
TATGACAGGCACAAGAGTCCTGAG
Done.