Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold37.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2109
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23


Found at i:837 original size:25 final size:25

Alignment explanation


    Indices: 789--838  Score: 66
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        779 TTATAGCTGC

                           *   *     
        789 AAGGAAAATGAAATCTAGTGTTTTG
          1 AAGGAAAATGAAATCCAGTATTTTG

                                      
        814 AAGGAAAATGAAAATCCAG-ATTTTG
          1 AAGGAAAATG-AAATCCAGTATTTTG

        839 TTACGAATCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  25   15  0.68
  26    7  0.32

ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28


Consensus pattern (25 bp):   
AAGGAAAATGAAATCCAGTATTTTG
Done.