Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold372.9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24


Found at i:37 original size:3 final size:3

Alignment explanation


    Indices: 29--55  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

         19 AGCACTATAC

                                               
         29 TCA TCA TCA TCA TCA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA

         56 GGCTGGCACC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33


Consensus pattern (3 bp):   
TCA

Done.