Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold372.128

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1656
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23


Found at i:428 original size:15 final size:15

Alignment explanation


    Indices: 410--455  Score: 58
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        400 CCACCTCCGC

                           
        410 GAGCTGCCTCTCCTA
          1 GAGCTGCCTCTCCTA

                   *     * 
        425 GAGCTGCTTCTCCGA
          1 GAGCTGCCTCTCCTA

                            
        440 GAGCTG-CTCTTCCTA
          1 GAGCTGCCTC-TCCTA

             
        455 G
          1 G

        456 GATAGTTCGT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  14    2  0.08
  15   24  0.92

ACGTcount: A:0.13, C:0.35, G:0.24, T:0.28


Consensus pattern (15 bp):   
GAGCTGCCTCTCCTA
Done.