Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold374.16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5496
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:4856 original size:36 final size:36

Alignment explanation


    Indices: 4816--4987  Score: 238
    Period size: 36  Copynumber: 4.8  Consensus size: 36

       4806 ACCTGTAGTG

                            *            *      
       4816 AATAGTTCTTGGGACCTACAAAAATCACCAACAACA
          1 AATAGTTCTTGGGACCAACAAAAATCACCTACAACA

                                               *
       4852 AATAGTTCTTGGGACCAACAAAAATCACCTACAACG
          1 AATAGTTCTTGGGACCAACAAAAATCACCTACAACA

                     *                        **
       4888 AATAGTTCTGGGGACCAACAAAAATCACCTACAATG
          1 AATAGTTCTTGGGACCAACAAAAATCACCTACAACA

                                   *  *         
       4924 AATAGTTCTTGGGACCAACAAAATTCCCCTACAA-A
          1 AATAGTTCTTGGGACCAACAAAAATCACCTACAACA

                *         *              
       4959 TAATGGTTCTTGGGCCCAACAAAAATCAC
          1 -AATAGTTCTTGGGACCAACAAAAATCAC

       4988 AAGAAACTTC


Statistics
Matches: 122,  Mismatches: 13, Indels: 2
        0.89            0.09        0.01

Matches are distributed among these distances:
  36  122  1.00

ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21


Consensus pattern (36 bp):   
AATAGTTCTTGGGACCAACAAAAATCACCTACAACA

Done.