Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold38.3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 294
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21


Found at i:278 original size:33 final size:34

Alignment explanation


    Indices: 205--279  Score: 91
    Period size: 33  Copynumber: 2.3  Consensus size: 34

        195 CTTCTGGGAA

                        *                     
        205 GCAGAAGCTCCAGCAGAAGCCGAGGCAAAGCCCT
          1 GCAGAAGCTCCAACAGAAGCCGAGGCAAAGCCCT

              *                   *   *    *  
        239 -CTGAAGCTCCAACAGAAGCCGGGGCGAAG-TCT
          1 GCAGAAGCTCCAACAGAAGCCGAGGCAAAGCCCT

                     
        271 GCAGAAGCT
          1 GCAGAAGCT

        280 GTTGCAGCGG


Statistics
Matches: 34,  Mismatches: 6, Indels: 3
        0.79            0.14        0.07

Matches are distributed among these distances:
  32    2  0.06
  33   32  0.94

ACGTcount: A:0.31, C:0.29, G:0.31, T:0.09


Consensus pattern (34 bp):   
GCAGAAGCTCCAACAGAAGCCGAGGCAAAGCCCT
Done.