Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold4.427

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 205

Length: 342
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28


Found at i:136 original size:14 final size:14

Alignment explanation


    Indices: 117--146  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        107 CCAGAGAGGT

                          
        117 TTCATTCCATTTGG
          1 TTCATTCCATTTGG

                          
        131 TTCATTCCATTTGG
          1 TTCATTCCATTTGG

              
        145 TT
          1 TT

        147 TAAGAAGAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53


Consensus pattern (14 bp):   
TTCATTCCATTTGG
Done.