Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold40.260

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26


Found at i:941 original size:6 final size:6

Alignment explanation


    Indices: 930--955  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        920 ATACACTGAC

                                          
        930 AGGCCA AGGCCA AGGCCA AGGCCA AG
          1 AGGCCA AGGCCA AGGCCA AGGCCA AG

        956 CCACTCTCAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.35, C:0.31, G:0.35, T:0.00


Consensus pattern (6 bp):   
AGGCCA

Done.