Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold400.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 249
ACGTcount: A:0.19, C:0.11, G:0.41, T:0.29


Found at i:128 original size:12 final size:12

Alignment explanation


    Indices: 88--128  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

         78 GGGATATGGA

                        
         88 AGTGGTGGTGGT
          1 AGTGGTGGTGGT

              *     *   
        100 AGAGGTGGAGGT
          1 AGTGGTGGTGGT

                        
        112 AGTGGTGGTGGT
          1 AGTGGTGGTGGT

            *    
        124 GGTGG
          1 AGTGG

        129 AGGAGGAGGA


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.12, C:0.00, G:0.61, T:0.27


Consensus pattern (12 bp):   
AGTGGTGGTGGT
Done.