Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold11.347

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2055
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29


Found at i:1274 original size:42 final size:42

Alignment explanation


    Indices: 1215--1297  Score: 130
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1205 TGCTTTGTCC

                                 *    *               
       1215 TGCCCATTCTGCAGTCAAGTTTCCAAGTGAGAAGTCTGGAAG
          1 TGCCCATTCTGCAGTCAAGTTCCCAAATGAGAAGTCTGGAAG

                      **                             
       1257 TGCCCATTCTTTAGTCAAGTTCCCAAATGAGAAGTCTGGAA
          1 TGCCCATTCTGCAGTCAAGTTCCCAAATGAGAAGTCTGGAA

       1298 ATTGTGTACC


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28


Consensus pattern (42 bp):   
TGCCCATTCTGCAGTCAAGTTCCCAAATGAGAAGTCTGGAAG
Done.