Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold407.22

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2601
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:93 original size:9 final size:9

Alignment explanation


    Indices: 75--106  Score: 55
    Period size: 9  Copynumber: 3.6  Consensus size: 9

         65 CCATTCAAAC

                     
         75 TTCTTCTTG
          1 TTCTTCTTG

                 *   
         84 TTCTTTTTG
          1 TTCTTCTTG

                     
         93 TTCTTCTTG
          1 TTCTTCTTG

                 
        102 TTCTT
          1 TTCTT

        107 ATTCTTCAGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.00, C:0.19, G:0.09, T:0.72


Consensus pattern (9 bp):   
TTCTTCTTG
Done.