Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold411.2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2952
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:2146 original size:48 final size:48

Alignment explanation


    Indices: 2090--2196  Score: 169
    Period size: 48  Copynumber: 2.2  Consensus size: 48

       2080 CGAGGAACAC

                                     *             * **     
       2090 ACAAACATGGAGGAAAATGTTGCAACTCTTCAGCTGCATTGTGCACAG
          1 ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG

                                            *               
       2138 ACAAACATGGAGGAAAATGTTGCAAATCTTCATCTGCATCGCACACAG
          1 ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG

                       
       2186 ACAAACATGGA
          1 ACAAACATGGA

       2197 TGCAAAACCA


Statistics
Matches: 54,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  48   54  1.00

ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21


Consensus pattern (48 bp):   
ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG
Done.