Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: evm.model.Scaffold411.2 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2952 ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26 Found at i:2146 original size:48 final size:48 Alignment explanation
Indices: 2090--2196 Score: 169 Period size: 48 Copynumber: 2.2 Consensus size: 48 2080 CGAGGAACAC * * ** 2090 ACAAACATGGAGGAAAATGTTGCAACTCTTCAGCTGCATTGTGCACAG 1 ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG * 2138 ACAAACATGGAGGAAAATGTTGCAAATCTTCATCTGCATCGCACACAG 1 ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG 2186 ACAAACATGGA 1 ACAAACATGGA 2197 TGCAAAACCA Statistics Matches: 54, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 48 54 1.00 ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21 Consensus pattern (48 bp): ACAAACATGGAGGAAAATGTTGCAAATCTTCAGCTGCATCGCACACAG Done.