Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold412.332

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2178
ACGTcount: A:0.26, C:0.13, G:0.36, T:0.25


Found at i:687 original size:6 final size:6

Alignment explanation


    Indices: 678--712  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        668 TTGCTGGTCC

                                             *      
        678 TGGTGT TGGTGT TGGTGT TGGTGT TGGTGC TGGTG
          1 TGGTGT TGGTGT TGGTGT TGGTGT TGGTGT TGGTG

        713 CAAGTGGGAC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.00, C:0.03, G:0.51, T:0.46


Consensus pattern (6 bp):   
TGGTGT

Done.