Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold417.15

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 159
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21


Found at i:64 original size:15 final size:15

Alignment explanation


    Indices: 40--71  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         30 CATGATGGGG

                           
         40 AGAAAAAGAAGAAGA
          1 AGAAAAAGAAGAAGA

                 *         
         55 AGAAAGAGAAGAAGA
          1 AGAAAAAGAAGAAGA

              
         70 AG
          1 AG

         72 CATGAGGATG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (15 bp):   
AGAAAAAGAAGAAGA
Done.