Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1.359

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 228

Length: 381
ACGTcount: A:0.16, C:0.29, G:0.24, T:0.31


Found at i:27 original size:3 final size:3

Alignment explanation


    Indices: 19--43  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

          9 AGAAAGACAA

                                             
         19 GGT GGT GGT GGT GGT GGT GGT GGT G
          1 GGT GGT GGT GGT GGT GGT GGT GGT G

         44 CACCCCATGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32


Consensus pattern (3 bp):   
GGT

Done.