Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold426.35

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3618
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27


Found at i:645 original size:24 final size:24

Alignment explanation


    Indices: 618--665  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        608 AGGGTGATGG

                 *                  
        618 AGAGGCTGAGGGTGAAGATGAAGA
          1 AGAGGATGAGGGTGAAGATGAAGA

                     *     *        
        642 AGAGGATGATGGTGATGATGAAGA
          1 AGAGGATGAGGGTGAAGATGAAGA

        666 GGGTGAAGAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.38, C:0.02, G:0.44, T:0.17


Consensus pattern (24 bp):   
AGAGGATGAGGGTGAAGATGAAGA
Done.