Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold430.11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 284

Length: 474
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16


Found at i:148 original size:24 final size:24

Alignment explanation


    Indices: 121--167  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        111 AGCCGAAATG

                               *     
        121 GAGGAAGA-AGAAGAAGAGTCTGAA
          1 GAGGAA-ATAGAAGAAGAGCCTGAA

                                   
        145 GAGGAAATAGAAGAAGAGCCTGA
          1 GAGGAAATAGAAGAAGAGCCTGA

        168 GAAACGAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23    1  0.05
  24   20  0.95

ACGTcount: A:0.49, C:0.06, G:0.36, T:0.09


Consensus pattern (24 bp):   
GAGGAAATAGAAGAAGAGCCTGAA
Done.